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Table 2 Significant genetic loci for competition of E. coli with P. aeruginosa in the absence of glucose

From: Overflow metabolism provides a selective advantage to Escherichia coli in mixed cultures

Name

Annotation

log2FC

q

tolC

Transport channel

-1.575

9.22E-119

arcB

Aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB

-1.014

8.98E-49

prc

Carboxy-terminal protease for penicillin-binding protein 3

1.029

1.39E-27

glnA

Glutamine synthetase

1.078

2.81E-09

736409_736515

Repetitive extragenic palindromic element

2.377

1.61E-08

sucA

2-oxoglutarate decarboxylase; thiamine triphosphate-binding

1.072

2.62E-06

dapF

Diaminopimelate epimerase

1.065

6.34E-06

lpp

Murein lipoprotein

1.337

9.78E-05

purA

Adenylosuccinate synthetase

1.497

0.0016

3297862_3297891

Repetitive extragenic palindromic element

-1.637

0.0032

atpG

F1 sector of membrane-bound ATP synthase gamma subunit

1.056

0.0040

rpsR

30S ribosomal subunit protein S18

1.051

0.0043

2542824_2542922

Repetitive extragenic palindromic element

1.448

0.0061

gmhB

D,D-heptose 1,7-bisphosphate phosphatase for LPS core synthesis

1.128

0.0073

  1. Significance was determined by log2 fold change in abundance of mutants (log2FC) above 1 and below − 1, and q-value less than 0.01. Loci in bold type were identified both with and without glucose