From: Rhizosphere microbiome: revisiting the synergy of plant-microbe interactions
Host plant | Dominant members of the rhizosphere microbiome | Reference |
---|---|---|
Oak | (Characterized by 16S rRNA gene sequencing) identified 5619 bacterial OTUs (operational taxonomic unit) with 38% Proteobacteria, 24% Acidobacteria, 11% Actinobacteria, and 20% unclassified bacteria | Uroz et al. (2010) |
Sugarbeet | (Characterized by 16S rRNA gene microarray) | Mendes et al. (2011) |
Detected 33,346 bacterial and archaeal OTUs, of which 39% were Proteobacteria (Gamma- and Betaproteobacteria), 20% were Firmicutes, 9% were Actinobacteria | ||
Rice | (Characterized by 16S rRNA gene sequencing) | Edwards et al. (2015) |
Bacteroidetes, Firmicutes, Chloroflexi, and Betaproteobacteria (Rhodocyclaceae, Comamonadaceae), Alphaproteobacteria, Deltaproteobacteria | ||
Sugarcane | (Characterized by 16S rRNA gene sequencing) | Yeoh et al. (2016) |
Betaproteobacteria (Undibacterium, Burkholderia), Alphaproteobacteria (Bradyrhizobium, Rhizobium), Bacteroidetes (Niastella, Chitinophaga), Gammaproteobacteria (Dyella, Frateuria), Actinobacteria (Streptomyces, Cryocola), Chloroflexi and Firmicutes (Bacillus) | ||
Sugarcane | (Characterized by sequencing of 16S and ITS ribosomal RNA genes) | de Souza et al. (2016) |
Identified 23,811 bacterial OTUs and 11,727 fungal OTUs. Major families were Chitinophagaceae, Rhodospirillaceae, Hyphomicrobiaceae, Burkholderiaceae, Rhizobiaceae, Sphingobacteriaceae, Sphingomonadaceae, Sistotremataceae, Meruliaceae, Ceratocystidaceae, Chaetosphaeriaceae, Glomeraceae | ||
Oilseed rape | (Characterized by RNA stable isotope probing and high-throughput sequencing) | Gkarmiri et al. (2017) |
Verrucomicrobia, Proteobacteria, Planctomycetes, Acidobacteria, Gemmatimonadetes, Actinobacteria, Flavobacterium, Rhodoplanes, Sphingomonas, Streptomyces, Chloroflexi, Rhizobium | ||
Arabidopsis thaliana | (Characterized by sequencing of the ITS2 region) | Urbina et al. (2018) |
Ascomycetes (542 OTUs) and Basidiomycetes (145 OTUs) were the abundant phyla, and Archaeorhizomycetes, Leotiomycetes, Dothideomycetes, Eurotiomycetes and Sordariomycetes were the abundant classes | ||
Canola | (Characterized by sequencing of 16S and ITS ribosomal RNA genes) | Lay et al. (2018) |
Identified 6376 bacterial OTUs, 679 fungal OTUs and 49 archaeal OTUs, including Amycolatopsis sp., Serratia proteamaculans, Pedobacter sp., Arthrobacter sp., Stenotrophomonas sp., Fusarium merismoides, Fusicolla sp. | ||
Blueberry | (Characterized by 16S rRNA and 18S rRNA gene sequencing) | Yurgel et al. (2018) |
Abundant bacterial classes were Proteobacteria (Alphaproteobacteria and Gammaproteobacteria), Acidobacteria, Actinobacteria, Bacteroidetes, Saprospirae, Chloroflexi, Ktedonobacteria, and Verrucomicrobia Spartobacteria. Fungal taxa identified were Ascomycota, Basidiomycota, Mucoromycota, Glomeromycota, and Chytridiomycota |