Table 1 16S ribosomal RNA oligonucleotide probes used in the present study
From: Characterization of edible swiftlet’s nest as a prebiotic ingredient using a simulated colon model
Probe | Specificity | Sequence | Reference |
|---|---|---|---|
Bif164 | Bifidobacterium spp. | CATCCGGCATTACCACCC | Langendijk et al. (1995) |
Lab158 | Lactobacillus–Enterococcus | GGTATTAGCAYCTGTTTCCA | Harmsen et al. (1999) |
Bac303 | Most Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae | CCAATGTGGGGGACCTT | Manz et al. (1996) |
Chis150 | Most of the bacteria in the Clostridium histolyticum group (Clostridium clusters I and II) | TTATGCGGTATTAATCTYCCTTT | Franks et al. (1998) |
Erec482 | Most of the Clostridium coccoides–Eubacterium rectale group (Clostridium clusters XIVa and XIVb) | GCTTCTTAGTCARGTACCG | Franks et al. (1998) |
Prop853 | Clostridium cluster IX | ATTGCGTTAACT CCGGC | Walker et al. (2005) |
Ato291 | Atopobium cluster, includes Coriobacterium group | GGTCGG TCTCTCAACCC | Harmsen et al. (2000) |
Fpra655 | Faecalibacterium prausnitzii and relatives | CGC CTA CCT CTG CAC TAC | Hold et al. (2003) |