Table 1 Summary of InDels and structural variants identified between the Verminephrobacter eiseniae msu (SDQN00000000) and Verminephrobacter eiseniae EF01-2 (NC_008786) genomes
From: The draft genome of a new Verminephrobacter eiseniae strain: a nephridial symbiont of earthworms
Variant type | Variant subtype | No. of variants |
|---|---|---|
Deletion | Self-mapped | 353 |
Deletion | Paired breakpoint | 59 |
Deletion | Cross-mapped breakpoints | 39 |
 Total (deletion) |  | 451 |
Insertion | Self-mapped | 138 |
Insertion | Paired breakpoint | 49 |
Insertion | Close breakpoints | 65 |
Insertion | Tandem duplication | 7 |
 Total (insertion) |  | 259 |
Inversion | Cross-mapped breakpoints | 7 |
Inversion | Paired breakpoint | 0 |
 Total (inversion) |  | 7 |
Replacement | Paired breakpoint | 150 |
 Total (replacement) |  | 150 |
Translocation | Multiple breakpoints | 0 |
 Total (translocation) |  | 0 |
Complex | Cannot resolve sequence | 5 |
Complex | Multiple breakpoints | 1 |
Complex | Cross-mapped breakpoints (invalid orientation) | 0 |
 Total (complex) |  | 6 |
Total (InDels and structural variants) | Â | 873 |