Table 1 Stress-related genes predicted in the genome of B. velezensis VTX9

Oxidative stress

Superoxide dismutase

sod

orf_522, orf_1012, orf_1021

N-acetylglucosaminyl L-malate synthase

bshA

orf_815

N-acetylglucosaminyl-L-malate deacetylase

bshB12

orf_814, orf_1004

Glucosaminyl-malate cysteine ligase

bshC

orf_1517

Bacilliredoxin

brxABC

orf_139, orf_632, orf_939

Bacillithiol dilsufide reductase

ypdA

orf_763

NADH- oxidoreductase

-

orf_608, orf_651, orf_2543

Catalase

kat

orf_2172, orf_3239, orf_3266

Thiol peroxidase

tpx

orf_180, orf_2189

Glutathione peroxidase

gpx

orf_935

Alkyl hydroperoxide reductase

ahp

orf_3146, orf_3147

Bacillopeptidase

bpr

orf_1500, orf_1501

Manganese catalase

ydbD

orf_2341, orf_2441, orf_2588

Peroxide stress regulator

perR

orf_2188

Organic hydroperoxide regulator

ohrR

orf_1732, orf_2546

Organic hydroperoxide resistance

ohr

orf_1731, orf_1733, orf_2547

Nitric oxide dioxygenase

hmp

orf_25, orf_159

Thioredoxin

trx

orf_132, orf_280, orf_1472, orf_2778, orf_3892

Thioredoxin reductase

trxR

orf_763, orf_2717, orf_3665, orf_3963

Glyceraldehyde-3-phosphate dehydrogenase

gapDH

orf_225, orf_3740

Acid stress

ATP synthase

atp

orf_3445, orf_3446, orf_3447, orf_3448, orf_3449, orf_3450, orf_3451, orf_3452

PTS system

ptcC

orf_3271, orf_3283, orf_3299

Glucose-6-phosphate isomerase

pgi

orf_2

Pyruvate kinase

pyk

orf_203

Phosphoglycerate kinase

pgk

orf_3742

RecA protein

recA

orf_1326

ATP-dependent Clp protease

clp

orf_1673

GTP pyrophosphokinase

rel

orf_370, orf_1899, orf_3293

Enolase

eno

orf_3745

Chaperone protein

dnaK

orf_474

Bile stress

Glucosamine-6-phosphate deaminase

nagB

orf_3643

CTP synthase

pyrG

orf_3414

Arginyl-tRNA synthetase

argS

orf_3397

Oligopeptide ABC transporter

oppA

orf_1917, orf_1918, orf_1925, orf_1926, orf_2177

Ribosomal protein

rps/rpl

orf_2895, orf_2897, orf_2900, orf_2906, orf_2911,

Choloylglycine hydrolase

chb

orf_3265

Inorganic pyrophosphatase

PPase

orf_3083