Table 1 Degradation (%)of Methyl Red and Orange II by 79 bacterial isolatesa
Isolate # | Identity based on 16S rRNA | BLAST on NCBI 16S RefSeq database | Methyl Redb | Orange IIb | |||||
|---|---|---|---|---|---|---|---|---|---|
Type strain (Sequence ID) | % Identity | 1 h | 8 h | 24 h | 1 h | 8 h | 24 h | ||
1 | Paenalcaligenes suwonensis | P. suwonensis ABC02-12 (NR_133804.1) | 99.23 | 20 ± 3 | 96 ± 4 | 100 ± 0 | 5 ± 3 | 18 ± 5 | 92 ± 8 |
4 | Bacillus acidiceler | B. acidiceler CBD 119 (NR_043774.1) | 99.67 | 99 ± 1 | 100 ± 0 | 100 ± 0 | 9 ± 1 | 25 ± 4 | 43 ± 3 |
5 | Bacillus velezensis | B. velezensis FZB42 ( NR_075005.2) | 99.64 | 74 ± 10 | 100 ± 0 | 100 ± 0 | 8 ± 2 | 12 ± 1 | 25 ± 2 |
6 | Bacillus velezensis | B. velezensis FZB42 ( NR_075005.2) | 99.74 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 2 ± 1 | 8 ± 4 | 24 ± 2 |
7 | Bacillus haikouensis | B. haikouensis C-89 ( NR_148273.1) | 99.39 | 62 ± 13 | 100 ± 0 | 100 ± 0 | 7 ± 2 | 13 ± 2 | 62 ± 5 |
8 | Bacillus marisflavi | B. marisflavi TF-11 (NR_025240.1) | 99.73 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 5 ± 1 | 13 ± 1 | 38 ± 3 |
9 | Bacillus drentensis | B. drentensis IDA1967 (NR_029002.1) | 99.65 | 30 ± 1 | 100 ± 0 | 100 ± 0 | 7 ± 1 | 56 ± 10 | 69 ± 6 |
10 | Bacillus aryabhattai | B. aryabhattai B8W22 (NR_115953.1) | 99.87 | 89 ± 11 | 100 ± 0 | 100 ± 0 | 4 ± 1 | 24 ± 6 | 90 ± 10 |
11 | Bacillus aryabhattai | B. aryabhattai B8W22 (NR_115953.1) | 99.80 | 24 ± 5 | 100 ± 0 | 100 ± 0 | 10 ± 1 | 26 ± 4 | 81 ± 11 |
12 | Bacillus oryzisoli | B. oryzisoli 1DS3-10 (NR_151979.1) | 98.88 | 89 ± 2 | 98 ± 2 | 97 ± 3 | 7 ± 1 | 8 ± 2 | 26 ± 5 |
13 | Bacillus cereus | B. cereus CCM 2010 ( NR_115714.1) | 99.74 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 7 ± 4 | 42 ± 3 | 92 ± 8 |
14 | Bacillus cereus | B. cereus CCM 2010 ( NR_115714.1) | 99.01 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 47 ± 5 | 75 ± 4 | 75 ± 4 |
15 | Bacillus chungangensis | B. chungangensis CAU 348 (NR_116709.1) | 99.32 | 15 ± 5 | 93 ± 8 | 100 ± 0 | 9 ± 2 | 9 ± 2 | 22 ± 1 |
16 | Bacillus cohnii | B. cohnii DSM 6307 (NR_026138.1) | 99.67 | 48 ± 5 | 100 ± 0 | 100 ± 0 | 11 ± 1 | 13 ± 2 | 35 ± 4 |
17 | Bacillus cohnii | B. cohnii DSM 6307 (NR_026138.1) | 99.40 | 9 ± 3 | 41 ± 2 | 85 ± 4 | 9 ± 1 | 10 ± 1 | 14 ± 1 |
18 | Bacillus cohnii | B. cohnii DSM 6307 (NR_026138.1) | 99.60 | 21 ± 3 | 100 ± 0 | 100 ± 0 | 8 ± 2 | 13 ± 2 | 37 ± 7 |
19 | Bacillus cohnii | B. cohnii DSM 6307 (NR_026138.1) | 99.67 | 57 ± 12 | 100 ± 0 | 100 ± 0 | 9 ± 3 | 18 ± 6 | 81 ± 11 |
20 | Bacillus firmus | B. firmus IAM 12464 (NR_112635.1) | 99.13 | 96 ± 4 | 100 ± 0 | 100 ± 0 | 8 ± 1 | 10 ± 2 | 24 ± 3 |
21 | Bacillus depressus | B. depressus BZ1 (NR_146034.1) | 99.52 | 50 ± 6 | 100 ± 0 | 100 ± 0 | 9 ± 1 | 26 ± 1 | 100 ± 0 |
22 | Bacillus depressus | B. depressus BZ1 (NR_146034.1) | 99.59 | 18 ± 5 | 100 ± 0 | 100 ± 0 | 7 ± 3 | 13 ± 1 | 21 ± 6 |
23 | Bacillus halodurans | B. halodurans DSM 497 (NR_025446.1) | 99.87 | 18 ± 5 | 100 ± 0 | 100 ± 0 | 7 ± 1 | 11 ± 2 | 21 ± 1 |
24 | Bacillus horikoshii | B. horikoshii DSM 8719 (NR_040852.1) | 99.27 | 25 ± 5 | 100 ± 0 | 100 ± 0 | 8 ± 0 | 11 ± 1 | 53 ± 7 |
25 | Bacillus horneckiae | B. horneckiae 1P01SC (NR_116474.1) | 99.34 | 33 ± 5 | 100 ± 0 | 100 ± 0 | 9 ± 4 | 11 ± 5 | 25 ± 11 |
26 | Bacillus horneckiae | B. horneckiae 1P01SC (NR_116474.1) | 99.78 | 40 ± 5 | 100 ± 0 | 100 ± 0 | 3 ± 2 | 11 ± 1 | 34 ± 3 |
27 | Bacillus licheniformis | B. licheniformis DSM 13 (NR_118996.1) | 99.54 | 41 ± 4 | 100 ± 0 | 100 ± 0 | 8 ± 6 | 22 ± 4 | 51 ± 7 |
28 | Bacillus licheniformis | B. licheniformis DSM 13 (NR_118996.1) | 99.54 | 77 ± 8 | 99 ± 1 | 100 ± 0 | 12 ± 3 | 20 ± 3 | 59 ± 4 |
29 | Bacillus litoralis | B. litoralis SW-211 (NR_043015.1) | 98.60 | 44 ± 12 | 100 ± 0 | 100 ± 0 | 12 ± 4 | 18 ± 8 | 96 ± 4 |
30 | Bacillus mannanilyticus | B. mannanilyticus AM-001 (NR_040851.1) | 96.93 | 30 ± 6 | 100 ± 0 | 100 ± 0 | 10 ± 0 | 11 ± 1 | 25 ± 6 |
31 | Bacillus megaterium | B. megaterium NBRC 15308 (NR_112636.1) | 99.86 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 7 ± 2 | 22 ± 2 | 92 ± 8 |
32 | Bacillus niacini | B. niacini IFO15566 (NR_024695.1) | 98.94 | 24 ± 10 | 100 ± 0 | 100 ± 0 | 8 ± 1 | 50 ± 10 | 98 ± 1 |
33 | Bacillus bataviensis | B. bataviensis IDA1115 (NR_036766.1) | 97.32 | 95 ± 5 | 100 ± 0 | 100 ± 0 | 9 ± 3 | 59 ± 5 | 98 ± 2 |
34 | Bacillus acidiceler | B. acidiceler CBD 119 (NR_043774.1) | 99.67 | 42 ± 7 | 100 ± 0 | 100 ± 0 | 7 ± 2 | 9 ± 2 | 15 ± 2 |
35 | Bacillus australimaris | B. australimaris MCCC 1A05787 (NR_148787.1) | 99.67 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 13 ± 3 | 10 ± 1 | 48 ± 3 |
36 | Bacillus xiamenensis | B. xiamenensis MCCC 1A00008 (NR_148244.1) | 99.47 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 7 ± 1 | 12 ± 2 | 48 ± 1 |
37 | Bacillus xiamenensis | B. xiamenensis MCCC 1A00008 (NR_148244.1) | 98.81 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 10 ± 4 | 12 ± 1 | 62 ± 1 |
38 | Bacillus xiamenensis | B. xiamenensis MCCC 1A00008 (NR_148244.1) | 99.74 | 96 ± 4 | 100 ± 0 | 100 ± 0 | 10 ± 1 | 16 ± 2 | 63 ± 2 |
39 | Bacillus simplex | B. simplex NBRC 15720 ( NR_042136.1) | 99.34 | 72 ± 8 | 100 ± 0 | 100 ± 0 | 18 ± 2 | 74 ± 7 | 74 ± 7 |
40 | Bacillus subtilis | B. subtilis IAM 12118 (NR_112116.2) | 99.60 | 97 ± 3 | 100 ± 0 | 100 ± 0 | 11 ± 0 | 11 ± 3 | 20 ± 3 |
41 | Bacillus subtilis | B. subtilis IAM 12118 (NR_112116.2) | 99.47 | 89 ± 5 | 100 ± 0 | 100 ± 0 | 8 ± 1 | 14 ± 1 | 45 ± 3 |
42 | Bacillus subtilis | B. subtilis IAM 12118 (NR_112116.2) | 99.34 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 7 ± 2 | 8 ± 1 | 19 ± 3 |
43 | Bacillus thermoamylovorans | B. thermoamylovorans LMG 18084 (NR_117028.1) | 99.60 | 19 ± 5 | 98 ± 2 | 99 ± 1 | 13 ± 3 | 97 ± 3 | 98 ± 1 |
44 | Bacillus thuringiensis | B. thuringiensis IAM 12077 (NR_043403.1) | 99.87 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 12 ± 0 | 56 ± 3 | 95 ± 2 |
45 | Bacillus thuringiensis | B. cereus CCM 2010 ( NR_115714.1) | 99.80 | 96 ± 4 | 100 ± 0 | 100 ± 0 | 4 ± 2 | 44 ± 9 | 91 ± 5 |
46 | Barrientosiimonas humi | B. humi 39 (NR_126227.1) | 99.80 | 13 ± 1 | 18 ± 1 | 33 ± 2 | 9 ± 2 | 9 ± 2 | 11 ± 2 |
47 | Brachybacterium faecium | B. faecium DSM 4810 (NR_074655.2) | 97.78 | 14 ± 2 | 100 ± 0 | 100 ± 0 | 11 ± 1 | 13 ± 3 | 76 ± 12 |
48 | Brachybacterium paraconglomeratum | B. paraconglomeratum LMG 19861 (NR_025502.1) | 99.12 | 14 ± 5 | 44 ± 8 | 90 ± 7 | 7 ± 2 | 10 ± 2 | 16 ± 5 |
49 | Brevibacillus formosus | B. formosus DSM 9885 (NR_040979.1) | 99.32 | 36 ± 4 | 100 ± 0 | 100 ± 0 | 10 ± 2 | 13 ± 1 | 33 ± 2 |
50 | Brevibacillus laterosporus | B. laterosporus DSM 25 (NR_112212.1) | 99.53 | 82 ± 8 | 77 ± 0 | 100 ± 0 | 9 ± 1 | 99 ± 1 | 100 ± 0 |
51 | Brevibacillus parabrevis | B. parabrevis IFO 12334 (NR_040981.1) | 99.26 | 28 ± 10 | 83 ± 6 | 100 ± 0 | 9 ± 1 | 14 ± 2 | 71 ± 3 |
52 | Dermacoccus barathri | D. barathri MT2.1 (NR_043261.1) | 99.79 | 14 ± 1 | 46 ± 4 | 99 ± 1 | 9 ± 2 | 11 ± 1 | 13 ± 2 |
53 | Pseudomonas aeruginosa | P. aeruginosa DSM 50071 ( NR_117678.1) | 99.93 | 20 ± 5 | 91 ± 10 | 99 ± 1 | 10 ± 5 | 21 ± 10 | 94 ± 6 |
54 | Fictibacillus arsenicus | F. phosphorivorans Ca7 (NR_118455) | 99.38 | 24 ± 5 | 30 ± 3 | 40 ± 3 | 13 ± 3 | 16 ± 2 | 36 ± 10 |
55 | Fictibacillus phosphorivorans | F. phosphorivorans Ca7 (NR_118455) | 99.58 | 31 ± 9 | 94 ± 6 | 96 ± 3 | 9 ± 1 | 10 ± 3 | 29 ± 9 |
56 | Kocuria marina | K. marina KMM 3905 (NR_025723.1) | 99.86 | 9 ± 4 | 54 ± 8 | 100 ± 0 | 7 ± 4 | 9 ± 2 | 11 ± 2 |
57 | Lysinibacillus fusiformis | L. fusiformis DSM 2898 (NR_042072.1) | 99.93 | 32 ± 8 | 100 ± 0 | 100 ± 0 | 9 ± 3 | 11 ± 3 | 83 ± 4 |
58 | Lysinibacillus fusiformis | L. fusiformis DSM 2898 (NR_042072.1) | 99.80 | 74 ± 11 | 100 ± 0 | 100 ± 0 | 4 ± 1 | 10 ± 3 | 82 ± 8 |
59 | Lysinibacillus fusiformis | L. fusiformis DSM 2898 (NR_042072.1) | 99.32 | 29 ± 10 | 100 ± 0 | 100 ± 0 | 8 ± 3 | 12 ± 2 | 83 ± 4 |
60 | Lysinibacillus macroides | L. macroides LMG 18474 (NR_114920.1) | 99.40 | 44 ± 7 | 100 ± 0 | 100 ± 0 | 8 ± 3 | 12 ± 3 | 80 ± 3 |
61 | Lysinibacillus macroides | L. macroides LMG 18474 (NR_114920.1) | 99.33 | 38 ± 8 | 100 ± 0 | 100 ± 0 | 5 ± 2 | 8 ± 3 | 85 ± 2 |
62 | Micrococcus luteus | M. luteus NCTC 2665 ( NR_075062.2) | 99.53 | 8 ± 2 | 42 ± 7 | 97 ± 3 | 6 ± 1 | 11 ± 3 | 18 ± 3 |
63 | Micrococcus luteus | M. luteus NCTC 2665 ( NR_075062.2) | 98.05 | 10 ± 2 | 34 ± 5 | 89 ± 5 | 7 ± 1 | 9 ± 2 | 17 ± 2 |
64 | Oceanobacillus chironomi | O. chironomi T3944D ( NR_043700.1) | 97.14 | 24 ± 6 | 100 ± 0 | 100 ± 0 | 13 ± 4 | 87 ± 9 | 92 ± 8 |
65 | Paenibacillus amylolyticus | P. amylolyticus NRRL NRS-290 (NR_025882.1) | 99.27 | 94 ± 6 | 100 ± 0 | 100 ± 0 | 1 ± 0 | 17 ± 6 | 60 ± 2 |
66 | Paenibacillus tundrae | P. tundrae A10b ( NR_044525.1) | 99.27 | 100 ± 0 | 100 ± 0 | 100 ± 0 | 4 ± 1 | 15 ± 4 | 53 ± 1 |
67 | Paenibacillus tundrae | P. tundrae A10b ( NR_044525.1) | 99.67 | 89 ± 9 | 100 ± 0 | 100 ± 0 | 6 ± 2 | 12 ± 2 | 51 ± 9 |
68 | Paenibacillus glucanolyticus | P. glucanolyticus DSM 5162 (NR_040883.1) | 99.47 | 16 ± 1 | 100 ± 0 | 100 ± 0 | 8 ± 2 | 10 ± 1 | 46 ± 3 |
69 | Paenibacillus lautus | P. lautus JCM 9073 (NR_040882.1) | 99.47 | 96 ± 4 | 100 ± 0 | 100 ± 0 | 6 ± 4 | 100 ± 0 | 100 ± 0 |
70 | Paenibacillus lautus | P. lautus JCM 9073 (NR_040882.1) | 99.60 | 19 ± 3 | 96 ± 4 | 97 ± 4 | 10 ± 1 | 100 ± 0 | 100 ± 0 |
71 | Providencia vermicola | P. vermicola OP1 ( NR_042415.1) | 99.66 | 44 ± 10 | 100 ± 0 | 100 ± 0 | 7 ± 4 | 9 ± 2 | 22 ± 2 |
72 | Pseudomonas aeruginosa | P. aeruginosa DSM 50071 ( NR_117678.1) | 99.73 | 11 ± 2 | 29 ± 2 | 100 ± 0 | 11 ± 2 | 12 ± 2 | 97 ± 2 |
73 | Pseudomonas aeruginosa | P. aeruginosa DSM 50071 ( NR_117678.1) | 99.87 | 10 ± 3 | 41 ± 3 | 84 ± 7 | 7 ± 1 | 11 ± 0 | 16 ± 5 |
74 | Pseudomonas aeruginosa | P. aeruginosa DSM 50071 ( NR_117678.1) | 99.93 | 7 ± 2 | 28 ± 6 | 100 ± 0 | 7 ± 1 | 14 ± 4 | 100 ± 0 |
75 | Pseudomonas aeruginosa | P. aeruginosa DSM 50071 ( NR_117678.1) | 99.87 | 9 ± 3 | 31 ± 9 | 100 ± 0 | 11 ± 1 | 18 ± 5 | 100 ± 0 |
76 | Lysinibacillus macroides | L. macroides LMG 18474 (NR_114920.1) | 99.33 | 51 ± 3 | 100 ± 0 | 100 ± 0 | 7 ± 4 | 13 ± 1 | 89 ± 3 |
77 | Pseudomonas aeruginosa | P. aeruginosa DSM 50071 ( NR_117678.1) | 99.87 | 6 ± 1 | 28 ± 6 | 100 ± 0 | 4 ± 1 | 15 ± 3 | 100 ± 0 |
78 | Psychrobacillus lasiicapitis | P. lasiicapitis NEAU-3TGS17 (NR_159144.1) | 98.95 | 16 ± 2 | 92 ± 8 | 100 ± 0 | 5 ± 2 | 13 ± 2 | 82 ± 13 |
79 | Roseomonas mucosa | R. mucosa MDA5527 ( NR_028857.1) | 99.72 | 13 ± 3 | 38 ± 5 | 97 ± 2 | 10 ± 2 | 9 ± 2 | 17 ± 3 |
80 | Sporosarcina luteola | S. luteola Y1 ( NR_112844.1) | 99.67 | 11 ± 2 | 71 ± 7 | 100 ± 0 | 5 ± 2 | 11 ± 3 | 70 ± 14 |
81 | Sporosarcina soli | S. soli I80 ( NR_043527.1) | 99.66 | 9 ± 1 | 90 ± 7 | 100 ± 0 | 12 ± 1 | 12 ± 2 | 27 ± 8 |