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Table 5 Genes related to plant growth promotion in the mutant strain YSD YN2 genome

From: Prospecting the plant growth–promoting activities of endophytic bacteria Franconibacter sp. YSD YN2 isolated from Cyperus esculentus L. var. sativus leaves

Gene

Gene product

Function

entF

Enterobactin synthetase component F

Siderophore synthesis

entE

2,3-Dihydroxybenzoate-AMP ligase

entB

Bifunctional isochorismate lyase / aryl carrier protein

entA

2,3-Dihydro-2,3-dihydroxybenzoate dehydrogenase

entD

Enterobactin synthetase component D

entC

Isochorismate synthase

entS

Enterobactin (siderophore) exporter

fepA

Ferric enterobactin receptor

fepC

Ferric enterobactin transport system ATP-binding protein

fepG

Ferric enterobactin transport system permease protein

fepD

Ferric enterobactin transport system permease protein

fepB

Ferric enterobactin transport system substrate-binding protein

fes

Iron(III)-enterobactin esterase

gcd

Glucose-1-dehydrogenase

Gluconic acid

pat

Phosphinothricin acetyltransferase

Phosphonates

phnO

(Aminoalkyl)phosphonate N-acetyltransferase

ilvC

Ketol-acid reductoisomerase

3-Hydroxy-2-butanone synthesis

ilvB

Acetolactate synthase I/II/III large subunit

ilvM

Acetolactate synthase II small subunit

ilvH

Acetolactate synthase I/III small subunit

budC

(S,S)-butanediol dehydrogenase / diacetyl reductase

2,3-Butanediol synthesis

otsA

Trehalose 6-phosphate synthase

Trehalose synthesis

otsB

Trehalose 6-phosphate phosphatase

treZ

Maltooligosyltrehalose trehalohydrolase

treA

Alpha,alpha-trehalase

treC

Trehalose-6-phosphate hydrolase

speE

Spermidine synthase

Spermidine synthesis

speA

Arginine decarboxylase

speB

Agmatinase

speC

Ornithine decarboxylase

speD

S-adenosylmethionine decarboxylase

speG

Diamine N-acetyltransferase

nirD

Nitrite reductase (NADH) small subunit

Nitrogen utilization

narI

Nitrate reductase gamma subunit

narH

Nitrate reductase / nitrite oxidoreductase, beta subunit

narG

Nitrate reductase / nitrite oxidoreductase, alpha subunit

narK

MFS transporter, NNP family, nitrate/nitrite transporter

nirB

Nitrite reductase (NADH) large subunit

nrtA

Nitrate/nitrite transport system substrate-binding protein

nrtB

Nitrate/nitrite transport system permease protein

nrtC

Nitrate/nitrite transport system ATP-binding protein

nasA

Assimilatory nitrate reductase catalytic subunit