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Table 4 Relative abundance of the dominant bacterial phylum, classes, orders, families, and genera in the citrus orchards

From: Variation of soil bacterial communities in a chronosequence of citrus orchard

Phylum(%)

Classes(%)

Orders(%)

Families(%)

Genera(%)

Proteobacteria (30.85)

Actinobacteria (24.81)

Norank (21.57)

Norank (32.01)

Norank_c__Acidobacteria (7.73)

Actinobacteria (24.89)

Acidobacteria (14.27)

Xanthomonadales (8.02)

Xanthomonadaceae (5.80)

Mizugakiibacter (4.45)

Acidobacteria (14.27)

Alphaproteobacteria (13.63)

Rhizobiales (6.81)

Acidothermaceae (4.23)

Acidothermus (4.23)

Chloroflexi (14.05)

Gammaproteobacteria (8.83)

Acidimicrobiales (5.57)

Acidobacteriaceae__Subgroup_1_(2.74)

norank_o__Gaiellales (3.09)

Gemmatimonadetes (2.78)

Betaproteobacteria (4.91)

Frankiales (5.40)

Acetobacteraceae (2.49)

Nitrospira (2.52)

Bacteroidetes (2.68)

Deltaproteobacteria (3.39)

Gaiellales (4.87)

Gemmatimonadaceae (2.41)

norank_f__Anaerolineaceae (2.41)

Firmicutes (2.62)

Gemmatimonadetes (2.78)

Rhodospirillales (4.

Anaerolineaceae (2.41)

norank_c__KD4-96 (1.96)

Nitrospirae (2.53)

Norank (2.60)

Planctomycetales (3.42)

Nitrosomonadaceae (1.98)

norank_f__Gemmatimonadaceae (1.95)

Planctomycetes (1.34)

Nitrospira (2.52)

Sphingobacteriales (3.33)

Xanthobacteraceae (1.75)

norank_f__Nitrosomonadaceae (1.91)

Saccharibacteria (1.18)

Anaerolineae (2.41)

Solirubrobacterales (2.93)

Solibacteraceae__Subgroup_3_(1.67)

norank_c__TK10 (1.60)

Latescibacteria (0.85)

Ktedonobacteria (2.22)

Gemmatimonadales (2.41)

Xanthomonadales_Incertae_Sedis (1.60)

Gaiella (1.58)

Verrucomicrobia (0.62)

KD4-96 (1.96)

Anaerolineales (2.41)

Gaiellaceae (1.58)

Acidobacterium (1.49)

Cyanobacteria (0.55)

Sphingobacteriia (1.80)

Nitrosomonadales (1.98)

Blastocatellaceae__Subgroup_4_(1.55)

norank_o__JG30-KF-AS9 (1.49)

Tectomicrobia (0.32)

Thermomicrobia (1.66)

Micrococcales (1.88)

Chitinophagaceae (1.38)

norank_o__Acidimicrobiales (1.49)

Aminicenantes (0.084)

Bacilli (1.62)

Micromonosporales (1.74)

Sphingomonadaceae (1.33)

norank_c__Actinobacteria (1.30)

Deinococcus-Thermus (0.082)

TK10 (1.60)

Solibacterales (1.67)

Nocardioidaceae (1.29)

norank_p__Saccharibacteria (1.17)

Parcubacteria (0.065)

Chloroflexia (1.08)

Bacillales (1.59)

Desulfurellaceae (1.22)

norank_f__Elev-16S-1332 (1.11)

GAL15 (0.046)

Clostridia (0.94)

Blastocatellales (1.55)

Hyphomicrobiaceae (1.12)

Sphingomonas (1.05)

Chlamydiae (0.045)

Clostridia (0.94)

Myxococcales (1.55)

Elev-16S-1332 (1.11)

Roseiflexus (1.03)

SBR1093 (0.043)

S085 (0.85)

JG30-KF-AS9 (1.49)

Bradyrhizobiaceae (1.00)

H16 (1.02)

Chlorobi (0.042)

Planctomycetacia (0.80)

Burkholderiales (1.45)

Rhodospirillaceae (0.923)

norank_o__JG30-KF-CM45 (0.96)

TM6__Dependentiae_ (0.022)

Unclassified (0.63)

Propionibacteriales (1.37)

Microbacteriaceae (0.88)

norank_f__DA111 (0.95)

Ignavibacteriae (0.015)

JG30-KF-CM66 (0.59)

Desulfurellales (1.22

Bacillaceae (0.87)

RB41 (0.93)

BRC1 (0.0102)

Cytophagia (0.58)

Chloroflexales (1.06)

Planctomycetaceae (0.80)

Bryobacter (0.92)

Hydrogenedentes (0.0056)

Cyanobacteria (0.54)

Unclassified (0.97)

Rhizobiales_Incertae_Sedis (0.923)

Bradyrhizobium (0.91)

FBP (0.0039)

Cyanobacteria (0.54)

JG30-KF-CM45 (0.96)

Pseudomonadaceae (0.71)

norank_f__Xanthobacteraceae (0.90)

Microgenomates (0.0022)

OPB35_soil_group (0.35)

Pseudomonadales (0.72)

Streptomycetaceae (0.71)

Acidibacter (0.90)

Elusimicrobia (0.0015)

Spartobacteria (0.33)

SC-I-84 (0.72)

Comamonadaceae (0.65)

norank_c__S085 (0.85)

Gracilibacteria (0.0011)

Gitt-GS-136 (0.32)

Streptomycetales (0.72)

Cytophagaceae (0.57)

norank_p__Latescibacteria (0.84)

RBG-1__Zixibacteria_ (0.0011)

Flavobacteriia (0.29)

Cytophagales (0.57)

Rhodobiaceae (0.56)

unclassified_f__Acetobacteraceae (0.83)

Candidatus_Berkelbacteria (0.0007)

Caldilineae (0.26)

Corynebacteriales (0.51)

Rhodobiaceae (0.56)

Nocardioides (0.77)

 

OM190 (0.25)

Caulobacterales (0.49)

Intrasporangiaceae (0.54)

Bacillus (0.76)

 

Ardenticatenia (0.24)

Sphaerobacterales (0.49)

Solirubrobacteraceae (0.51)

norank_f__Rhodospirillaceae (0.74)

 

Phycisphaerae (0.23)

Clostridiales (0.48)

Haliangiaceae (0.50)

norank_o__SC-I-84 (0.72)

 

SBR2076 (0.10)

Ktedonobacterales (0.45)

Sphaerobacteraceae (0.49)

Streptomyces (0.71)

 

Deinococci (0.08)

Halanaerobiales (0.45)

Rhodospirillales_Incertae_Sedis (0.47)

Candidatus_Solibacter (0.68)

 

Pla3_lineage (0.04)

NB1-j (0.42)

unclassified_o__Acidimicrobiales (0.47)

norank_f__Acidimicrobiaceae (0.63)

 

Chlamydiae (0.04)

TRA3-20 (0.37)

ODP1230B8.23 (0.45)

norank_f__Planctomycetaceae (0.61)

 

Chlorobia (0.04)

Chthoniobacterales (0.35)

Planococcaceae (0.42)

norank_c__JG30-KF-CM66 (0.59)

 

Opitutae (0.03)

Streptosporangiales (0.32)

Methylobacteriaceae (0.41)

unclassified_f__Micromonosporaceae (0.59)