Diversity of members of the Streptomyces violaceusniger 16S rRNA gene clade in the legumes rhizosphere in Turkey

Sahin, Nevzat; Sazak, Anil; Güven, Kiymet; Dogramaci, Meral

doi:10.1007/s13213-010-0112-6

Table 3 Phenotypic properties that separate members of the Streptomyces violaceusniger 16 S rRNA gene clade

From: Diversity of members of the Streptomyces violaceusniger 16S rRNA gene clade in the legumes rhizosphere in Turkey

Phenotipic Tests	S. asiaticus DSM 41761 ^T	S. cangkringensis DSM 41769 ^T	S. hygroscopicus NRRL 2387 ^T	S. hygroscopicus NRRL 2339 ^T	S. hygroscopicus NRRL B-1477	S. geldanamycinus NRRL B-3602 ^T	S. indonesiensis DSM 41759 ^T	S. javensis DSM 41764 ^T	S. malaysiensis DSM 41697 ^T	S. melanosporofaciens NRRL B-12234 ^T	S. sporoclivatus NRRL B-24330 ^T	S. rhizosphaericus DSM 41760 ^T	S. violaceusniger ISP 5563	S. violaceusniger NRRL B-1476	S. albiflaviniger NRRL B-1356	S. demainii NRRL B-1478 ^T	S. griseiniger NRRL B-1865	S. yatensis DSM 41771 ^T	S. yogyakartensis DSM 41766 ^T	M4032	M1075	M1244	M4041	M1345
Enzyme activity
Aesculin hydrolysis	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+
Nitrate reduction	-	-	+	+	+	-	+	+	+	-	-	-	+	-	-	+	+	-	-	+	+	+	+	-
Urea hydrolysis	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-
Degradation tests (%, w/v)
Arbutin	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+
Casein (1)	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+
Elastin	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	-
Gelatin	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Guanine (0.05)	-	+	-	-	-	-	-	+	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-
Hypoxanthine (0.4)	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	+	+	+	+	+	+	-	-	-
RNA	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-
Starch	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+
Tween 80 (l%v/v)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	+	+
Xanthine	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Xylan	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+
Growth on sole C sources at %1 w/v
Adonitol	+	-	-	-	-	+	+	+	+	+	+	+	-	-	-	+	+	-	+	-	-	-	-	-
Aesculin	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+
l(+)Arabinose	+	+	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	-	+
Arbutin	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+
d(+)Cellobiose	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+	+	-	+
Dextrin	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	-	-
d(-) Fructose	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+
α-Lactose	+	+	-	-	-	+	+	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+
d-Mannitol (% 1)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
d-Mannose (% 1)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	+
Salicin	+	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	-	+	+	+	+	+	+	-
d-Trehalose	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
l-Valine (% 0.1)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-
d-Xylose	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-
Growth on sole N sources at %1 w/v
l(-) Alanine	+	-	-	+	+	-	-	+	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+
l(-)Histidine	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	-	+	-
l(-)Leucine	+	+	-	-	-	-	+	+	+	-	-	-	+	+	-	-	+	+	+	+	+	+	+	+
dl(-)Methionine	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+
l(-)Serine	-	+	+	+	+	-	+	+	+	-	-	-	+	+	+	+	-	+	+	+	+	+	+	+
Growth at
Sodium chloride (% 4)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+
Sodium chloride (% 7)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-
pH 4.0	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-
pH 5.0	-	+	+	+	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	+	+	+	+	+
pH 9.0	-	+	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	+	-	+	+	+	+	+
pH 10	+	+	-	-	-	-	+	-	+	-	-	+	+	-	-	+	-	+	-	-	-	-	-	+
4°C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Antibiotics (μg/ml)
Ampicillin (32)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Gentamycin sulphate (8)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Gentamycin sulphate (32)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Neomycin sulphate (16)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Neomycin sulphate (32)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Penicillin (10)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Penicillin (20)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Streptomycin sulphate (8)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-
Streptomycin sulphate (32)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-

Data for type strains were taken from Goodfellow et al. 2007

Back to article page

ISSN: 1869-2044

Contact us

Submission enquiries: jaybert.arellado@springernature.com
General enquiries: info@biomedcentral.com

Annals of Microbiology

Contact us