Diversity of members of the Streptomyces violaceusniger 16S rRNA gene clade in the legumes rhizosphere in Turkey

Sahin, Nevzat; Sazak, Anil; Güven, Kiymet; Dogramaci, Meral

doi:10.1007/s13213-010-0112-6

Table 4 Phenotypic properties that separate members of the Streptomyces violaceusniger 16S rRNA gene clade

From: Diversity of members of the Streptomyces violaceusniger 16S rRNA gene clade in the legumes rhizosphere in Turkey

Phenotipic Tests	M5038	M4052	M2062	M4039	M1243	M2048	M4031	M1491	M1241	M5047	M1286	M5077	M1375	M1473	M1082	M5055	M1455	M1362	M4033	M4042	M1247	M1456	M1331	M1256	M1351	M1470	M1481	M1287	M1444	M1399	M1499	M1400	M5090	M1001	M2002
Enzyme activity
Aesculin hydrolysis	+	+	+	-	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Nitrate reduction	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	+
Urea hydrolysis	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+	+	+
Degradation tests (%, w/v)
Arbutin	+	+	+	+	+	+	+	+	+	-	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Casein (1)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Elastin	-	+	-	+	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	-	-	-	-	+	+	+	+	+	+
Gelatin	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Guanine (0.05)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-
Hypoxanthine (0.4)	-	-	-	+	-	+	-	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+
RNA	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	-
Starch	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Tween 80 (l% v/v)	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+
Xanthine	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Xylan	+	+	-	+	-	-	+	+	+	+	+	-	-	+	-	-	+	-	+	-	-	-	-	+	-	+	+	+	+	-	-	-	-	-	-
Growth on sole C sources at %1 w/v
Adonitol	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	+	+	-
Aesculin	+	+	+	-	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	+
l(+)Arabinose	+	-	-	-	+	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	-	-	+	+	+	+	+	+	-
Arbutin	+	+	+	+	+	+	+	+	+	-	+	+	-	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	+
d(+)Cellobiose	+	+	+	+	+	+	+	+	+	+	-	-	+	+	-	+	+	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+
Dextrin	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-
d(-) Fructose	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	-	+	+	+	+	+	+	-	+	+	+	+	+
α-Lactose	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	-	+	-
d-Mannitol (% 1)	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+
d-Mannose (% 1)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+
Salicin	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	+	+	-	-	-	-	+	+	+	+	+	+	+	+	+	-	-	-
d-Trehalose	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
l-Valine (%0.1)	+	+	+	-	-	+	+	+	+	-	+	+	+	-	-	+	+	+	+	-	+	+	-	+	+	+	+	-	+	+	+	+	+	+	+
d-Xylose	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	+	+	+	+
Growth on sole N sources at %1 w/v
l(-) Alanine	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	-	+
l(-)Histidine	+	+	+	+	+	-	-	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	-	+	+	+	+	+	-
l(-)Leucine	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	-	+
dl(-)Methionine	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	-	+	-	+	+	+	-	-	-	-	-	-	+	-	+
l(-)Serine	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	-	+
Growth at
Sodium chloride (% 4)	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	+	-	-	-	+	-	-	+	+	+	+	+	+
Sodium chloride (% 7)	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	-
pH 4.0	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	-	+	-	+	-	-	+	+	-	-	-	-	-
pH 5.0	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	-	-	-	+	-	+
pH 9.0	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	+
pH 10	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	+	-	-	-	-	-
4°C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Antibiotics (μg/ml)
Ampicillin (32)	+	+	+	-	-	+	-	-	-	+	+	-	+	+	+	+	-	-	+	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+
Gentamycin sulphate (8)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	+
Gentamycin sulphate (32)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Neomycin sulphate (16)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-
Neomycin sulphate (32)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-
Penicillin (10)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Penicillin (20)	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Streptomycin sulphate (8)	-	-	+	-	-	+	+	+	+	+	-	-	-	+	-	+	-	-	-	-	-	-	+	+	-	+	+	+	+	-	-	-	-	-	+
Streptomycin sulphate (32)	-	-	+	-	-	+	-	-	-	+	-	-	-	+	-	+	-	-	-	-	-	-	+	-	-	-	+	-	+	-	-	-	-	-	+

Data for type strains were taken from Goodfellow et al. 2007

Back to article page

ISSN: 1869-2044

Contact us

Submission enquiries: jaybert.arellado@springernature.com
General enquiries: info@biomedcentral.com

Annals of Microbiology

Contact us