Table 1 Closest relatives of partial of 16S rDNA sequences derived from DGGE bands
DGGE band | Seq (bp) | Closest relatives | Similarity (%) | Alignment | ||
|---|---|---|---|---|---|---|
Microorganisms | Phylogenetic affiliations | Accession number | ||||
A | 160 | Uncultured betaproteobacterium clone BIqi38 | Betaproteobacteria | AJ318162 | 98 | 158/160 |
B | 139 | Uncultured Actinobacterium | Actinobacteria | EF074674 | 95 | 120/126 |
C | 155 | Flavobacterium sp. EMB117 | Bacteroidetes | DQ372986 | 100 | 155/155 |
D | 159 | Uncultured Verrucomicrobia clone FI-1M_C06 | Verrucomicrobia | EF220577 | 100 | 159/159 |
E | 159 | Uncultured Verrucomicrobia clone AKYG804 | Verrucomicrobia | AY922067 | 93 | 145/155 |
F | 159 | Uncultured Verrucomicrobia clone lhac15 | Verrucomicrobia | DQ648941 | 100 | 159/159 |
G | 160 | Uncultured betaproteobacterium clone M3sb8 | Betaproteobacteria | AF424752 | 97 | 155/159 |
H | 135 | Uncultured proteobacterium | Alphaproteobacteria | FJ854722 | 100 | 135/135 |
I | 135 | Uncultured proteobacterium clone RBE1CI-63 | Alphaproteobacteria | EF111072 | 100 | 135/135 |
J | 147 | Uncultured actinobacterium clone LW10 | Actinobacteria | DQ973235 | 96 | 137/142 |
K | 161 | Uncultured proteobacterium | Proteobacteria | DQ828988 | 100 | 161/161 |
L | 149 | Uncultured Gemmatimonadetes clone F07_MO02 | Gemmatimonadetes | EF220857 | 100 | 149/149 |
M | 160 | Uncultured betaproteobacterium clone LF089 | Betaproteobacteria | EF417778 | 100 | 139/139 |
N | 152 | Uncultured Gemmatimonadetes clone G03_SGPO01 | Gemmatimonadetes | EF221038 | 94 | 144/152 |
O | 152 | Uncultured Gemmatimonadetes bacterium | Gemmatimonadetes | EU297951 | 100 | 152/152 |
P | 130 | Uncultured actinobacterium clone A21YB07RM | Actinobacteria | FJ568800 | 97 | 97/100 |
Q | 149 | Uncultured proteobacterium | Proteobacteria | EF019642 | 96 | 144/149 |
R | 152 | Uncultured Gemmatimonadetes clone AUVE_11G10 | Gemmatimonadetes | EF651462 | 100 | 152/152 |
S | 139 | Uncultured soil bacterium clone L4-B04 | Bacteria | FJ930532 | 97 | 136/139 |
T | 117 | Uncultured gammaproteobacterium cloneSII-12 | Gammaproteobacteria | AJ853877 | 100 | 117/117 |
U | 140 | Uncultured soil bacterium clone 8 F-519R-16 | Bacteria | EU703597 | 100 | 140/140 |
V | 161 | Uncultured Gemmatimonadetes clone OS-C21 | Gemmatimonadetes | EF612384 | 100 | 161/161 |