Table 2 Closest relatives of partial of 18S rDNA sequences derived from DGGE bands
DGGE band | Seq (bp) | Closest relatives | Similarity (%) | Alignment | ||
|---|---|---|---|---|---|---|
Microorganisms | Phylogenetic affiliations | Accession number | ||||
fA | 174 | Mortierella alpina | Zygomycota | EF519903 | 100 | 174/174 |
fB | 172 | Uncultured soil clone 14-19 | Fungi | DQ420853 | 100 | 172/172 |
fM | 178 | Uncultured soil clone 57F33 | Fungi | FJ626936 | 100 | 178/178 |
fE | 185 | Uncultured clone Singleton | Fungi | FJ779614 | 86 | 169/147 |
fH | 185 | Phaeosphaeria lindii | Ascomycota | AF439489 | 98 | 183/185 |
fF | 223 | Uncultured Ascomycota clone A18YM12RM1 | Ascomycota | FN294291 | 99 | 179/180 |
fK | 147 | Trichocladium opacum | Ascomycota | AM292049 | 100 | 147/147 |
fL | 167 | Verticillium catenulatum | Ascomycota | AY555966 | 100 | 167/167 |
fP | 183 | Epacrid root endophyte E2-1-6 | Ascomycota | AF098291 | 90 | 166/184 |
fU | 172 | Pseudeurotium bakeri | Ascomycota | AY129287 | 100 | 165/172 |
fC | 148 | Guehomyces pullulans | Basidiomycota | AF444418 | 99 | 147/148 |
fD | 151 | Uncultured basidiomycete clone BF-OTU112 | Basidiomycota | AM901869 | 86 | 132/152 |
fQ | 143 | Uncultured basidiomycete A18YM12RM1 | Basidiomycota | FN295472 | 96 | 180/186 |
fI | 183 | Uncultured Ceratobasidium | Basidiomycota | EF154356 | 100 | 183/183 |
fN | 138 | Cryptococcus fragicola | Basidiomycota | AB035588 | 82 | 91/110 |
fT | 167 | Phallus rugulosus | Basidiomycota | AF324170 | 97 | 171/175 |
fO | 159 | Pythium myriotylum | Oomycetes | DQ102701 | 100 | 159/159 |
fV | 170 | Pythium myriotylum | Oomycetes | AM396958 | 100 | 170/170 |