Table 4 Homology comparison of cloned cDNA fragments with nucleic acid sequences in GenBank
Sequence name | Phase | The beginning and end site of coding region | The length of coding region | The number of amino acids | Homology analysis |
|---|---|---|---|---|---|
TBR1 | +2 | 56–181 | 126 | 41 | No homologous protein found |
−1 | 168–278 | 111 | 36 | No homologous protein found | |
−3 | 220–324 | 105 | 34 | No homologous protein found | |
−2 | 29–130 | 102 | 33 | No homologous protein found | |
TBR2 | −2 | 2–205 | 204 | 67 | No homologous protein found |
+1 | 217–351 | 135 | 44 | No homologous protein found | |
−3 | 247–351 | 105 | 34 | No homologous protein found | |
TBR3 | −3 | 1–149 | 149 | 49 | No homologous protein found |
+1 | 322–447 | 126 | 41 | Retrovirus-related hypothetical protein II 71 % (29/41) | |
+2 | 2–127 | 126 | 41 | No homologous protein found | |
TBR4 | −2 | 84–293 | 210 | 69 | No homologous protein found |
+1 | 142–344 | 204 | 67 | No homologous protein found | |
TBR5 | −2 | 31–300 | 270 | 89 | No homologous protein found |
+2 | 122–292 | 171 | 56 | No homologous protein found | |
+1 | 148–300 | 153 | 50 | No homologous protein found | |
TBR6 | −1 | 1–111 | 111 | 36 | No homologous protein found |
TBR7 | −3 | 201–461 | 261 | 86 | hypothetical protein-human unnamed protein product 69 % (49/71) |
+2 | 209–361 | 153 | 50 | No homologous protein found | |
+3 | 75–212 | 138 | 45 | No homologous protein found | |
−2 | 109–222 | 114 | 37 | No homologous protein found | |
TBR8 | +2 | 326–450 | 126 | 41 | No homologous protein found |
+3 | 3–119 | 117 | 38 | No homologous protein found | |
−2 | 310–414 | 105 | 34 | No homologous protein found | |
TBR9 | +3 | 162–305 | 144 | 47 | No homologous protein found |
TBR10 | +1 | 25–479 | 456 | 151 | RelA (Mycobacterium avium subsp. paratuberculosis str. K10) 85 % (133/156) |
−3 | 140–295 | 156 | 51 | No homologous protein found | |
−1 | 133–261 | 129 | 42 | No homologous protein found | |
TBR11 | +1 | 64–279 | 216 | 71 | Gene coI intron 1 protein (Neurospora crassa mitochondrial) 64 % (46/71) |
+3 | 3–116 | 114 | 37 | No homologous protein found | |
TBR12 | −3 | 153–254 | 102 | 33 | No homologous protein found |
TBR13 | +3 | 96–281 | 187 | 62 | Conserved hypothetical protein (Staphylococcus aureus subsp. aureus Mu50) 70 % (36/51) |
−3 | 35–145 | 111 | 36 | No homologous protein found | |
+1 | 1–111 | 111 | 36 | Hypothetical protein (Staphylococcus aureus subsp. aureus MW2) 83 % (30/36) | |
TBR14 | −3 | 1–248 | 248 | 82 | No homologous protein found |
−1 | 245–369 | 126 | 41 | No homologous protein found | |
TBR15 | −3 | 1–288 | 288 | 95 | Hypothetical protein (related to BCS1 protein precursor, Neurospora crassa) 86 % (83/96) |
−1 | 75–221 | 147 | 48 | No homologous protein found | |
−1 | 255–359 | 105 | 34 | No homologous protein found | |
TBR16 | −1 | 3–533 | 531 | 176 | Hypothetical protein (Neurospora crassa) 82 % (145/176) |
+2 | 296–541 | 246 | 81 | No homologous protein found | |
−2 | 368–475 | 108 | 35 | No homologous protein found | |
+3 | 210–214 | 105 | 34 | No homologous protein found |