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Table 3 Enumeration of isolates using standard techniques, Gen Bank Accession numbers and classification based on 16S rDNA-PCR–RFLP profiles

From: Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India

Location name

Average CFU ml−1 or g−1soil

No. of isolates

No. of clustersa

Accession number

No. of BBDG

Niche-specific BBDG

Chumathang, Jammu and Kashmir

1.1 × 104

32

18

JX312603, JX312607-8, JX312611, JX312612

5

 

Vashisht, Himachal Pradesh

6.7 × 104

26

12

JN411368, JN411370, JN411372, JN411374-75

5

Brevibacillus

Manikaran, Himachal Pradesh

1.3 × 104

58

45

JF343230, JF343233, JF343235, JN411328-31, JN411334-39, JN411341, JN411343, JX312613-16, JX312621, JX312624, JX312625-26, JX312628, JX312631- JX312633-34, JX312636-39

31

Aneurinibacillus danicus, Bacillus beijingensis, B. vireti, Brevibacillus agri, Lysinibacillus xylanilyticus, Paenibacillus pabuli, P. tylopili

Bakreshwar, West Bengal

4.1 × 104

41

23

JN411315-18, JN411321-25, JN411327, JX312592, JX312594-97, JX312599, JX428951

17

Bacillus fusiformis

Balrampur, Chhattisgarh

5.3 × 104

38

24

JX312575- JX312583, JX312585-88

13

Brevibacillus sp.

Leh, Ladakh, Jammu and Kashmir

1.5 × 104

90

74

JF343177-78, JF343180-81, JF343183, JF343185-86, JF343189-90, JF343192-93, JF343195, JF343197-98, JF343201-02, JF343204-5, JF343207, JF343212-14, JN411432-34, JN411438-42, JN411448, JN411459-65, JN411467, JX428996- 98, JX429001-02, JX429004, JN411300- 302, JN411304-314

59

Bacillus muralis, Lysinibacillus fusiformis, Paenibacillus terrae

Rohtang Pass, Himachal Pradesh

1.3 × 104

55

32

JX429005-06, JX429008-13, JX428965, JX428967, JX460851

11

Bacillus psychrosaccharolyticus, Paenibacillus lautus

Bhitarkanika, Odisha

6.5 × 105

85

49

JN411376- JN411381, JN411384-85, JN411388-97, JX460806- JX460810, JX460812- JX460814-16, JX460818-22, JX428950

33

Bacillus atrophaeus, B. bombysepticus, B. methylotrophicus

Sunderbans, West Bengal

4.5 × 103

99

56

JN411476-83, JN411487-88, JN411491-93, JN411495, JX460823-24, JX460828-29, JX460831, JX460835-36, JX460839-43 JX460845-48, JX428969-70

32

Bacillus alcalophilus, B. aquimaris B. cibi, B. barbaricus, B. horikoshii, B. hwajinpoensis, B. nanhaiensis, B. vietnamensis, Halobacillus litoralis, Paenibacillus amylolyticus, P. tundra, P. taichungensis

Sambhar Lake, Rajasthan

4.0 × 104

51

35

JX428971- JX428977, JX428981, JX428983, JX428985-86, JX428988- JX428994, JX645202-13, JX645218, JX645221, JX645226-27, JX645231

35

Ammoniphilus sp. Bacillus decolorationis, B. halodurans, B. methanolicus, B. safensis, B. vallismortis, Halobacillus dabanensis, H. trueperi, Oceanobacillus manasiensis

Rann of Kutch, Gujarat

1.5 × 104

99

53

JN411344-54, JN411356, JN411358, JN411360, JN411363, JN411365, JN411367, JX428957-58 JF802166- JX518269

61

Bacillus aerophilus, B. foraminis, B. sonorensis, Salinibacillus aidingensis, Sediminibacillus halophilus, Thalassobacillus devorans, Virgibacillus salarius

Chilka Lake, Odisha

4.0 × 106

91

57

JF343134-43, JF343146-49, JF343154-56, JF343159-61, JF343164, JF343166, JF343168, JF343171-75, JN411468-69, JN411471-72, JN411474, JX428952, JX428956

35

Pontibacillus sp.

Jaisalmer, Rajasthan

8.8 × 104

56

34

JN411400- JN411414, JN411416-17, JN411419-22, JX441879- JX441881

24

Bacillus endophyticus

Andaman and Nicobar Islands

6.9 × 104

48

32

JN411276- JN411288, JN411290- JN411298

22

Bacillus pseudomycoides

Kollam, Kerala

9.5 × 105

24

15

JN411423- JN411431

9

Bacillus amyloliquefaciens

  

893

559

 

392

 
  1. aNo of clusters after digestion with three restriction enzymes: -AluI, HaeIII and MspI
  2. BBDG–Bacillus and Bacillus-derived genera
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Annals of Microbiology

ISSN: 1869-2044

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