Table 1 AR gene-targeted primers used in this study and respective references
From: Survey of antibiotic resistance traits in strains of Lactobacillus casei/paracasei/rhamnosus
Target gene | Sequence (5′ → 3′) | Amplicon size (bp) | Reference |
|---|---|---|---|
aadA | ATCCTTCGGCGCGATTTTG GCAGCGCAATGACATTCTTG | 282 | Ouoba et al. 2008 |
aadE | ATGGAATTATTCCCACCTGA TCAAAACCCCTATTAAAGCC | 385 | Ouoba et al. 2008 |
aac(6′)aph(2″) | CCAAGAGCAATAAGGGCATA CACTATCATAACCACTACCG | 219 | Rojo-Bezares et al. 2006 |
aph(3″)-IIIa | GCCGATGTGGATTGCGAAAA GCTTGATCCCCAGTAAGTCA | 291 | Rojo-Bezares et al. 2006 |
bla | CATARTTCCGATAATASMGCC CGTSTTTAACTAAGTATSGY | 297 | Hummel et al. 2007 |
cat* | TTAGGTTATTGGGATAAGTTA GCATGRTAACCATCACAWAC | 300 | Hummel et al. 2007 |
ermA | TCAAAGCCTGTCGGAATTGG AAGCGGTAAACCCCTCTGAG | 441 | Jensen et al. 1999 |
ermB | CATTTAACGACGAAACTGGC GGAACATCTGTGGTATGGCG | 425 | Jensen et al. 1999 |
ermC | ATCTTTGAAATCGGCTCAGG CAAACCCGTATTCCACGATT | 295 | Jensen et al. 1999 |
ermT | TATTATTGAGATTGGTTCAGGG GGATGAAAGTATTCTCTAGGGATTT | 395 | Tannock et al. 1994 |
lnuA | TGGAAAACAACAAAGAGAACACA CCAGAATGAAAAAGAAGTTGAGC | 317 | Rosander et al. 2008 |
mefA/E | AGTATCATTAATCACTAGTGC TTCTTCTGGTACTAAAAGTGG | 348 | Sutcliffe et al. 1996 |
mrsA/B | GCAAATGGTGTAGGTAAGACAACT ATCATGTGATGTAAACAAAAT | 399 | Sutcliffe et al. 1996 |
strA | CTTGGTGATAACGGCAATTC CCAATCGCAGATAGAAGGC | 547 | Ouoba et al. 2008 |
strB | ATCGTCAAGGGATTGAAACC GGATCGTAGAACATATTGGC | 508 | Ouoba et al. 2008 |
tetK | TCGATAGGAACAGCAGTA CAGCAGATCCTACTCCTT | 169 | Ng et al. 2001 |
tetL | TCGTTAGCGTGCTGTCATTC GTATCCCACCAATGTAGCCG | 267 | Ng et al. 2001 |
tetM | GTGGACAAAGGTACAACGAG CGGTAAAGTTCGTCACACAC | 406 | Ng et al. 2001 |
tetO | AACTTAGGCATTCTGGCTCAC TCCCACTGTTCCATATCGTC | 515 | Ng et al. 2001 |
tetS | CATAGACAAGCCGTTGACC ATGTTTTTGGAACGCCAGAG | 667 | Ng et al. 2001 |
tetW | GAGAGCCTGCTATATGCCAGC GGGCGTATCCACAATGTTAAC | 168 | Aminov et al. 2001 |