Table 1 Phylogenetic affiliation of R. lucifugus gut clones
From: The gut microbiota of the wood-feeding termite Reticulitermes lucifugus (Isoptera; Rhinotermitidae)
Phylogeny (RDPII)a | No. of clones in the OTUb | Sequenced clone(s) | BLAST results (16S database)c | ||||
|---|---|---|---|---|---|---|---|
Phylum | Class | Family | Most closely related sequence | Identity % | Accession number | ||
Bacteroidetes | Sphingobacteria | Cytophagaceae | 1 | RL45 | Prolixibacter bellariivorans F2 | 86 | NR_043273.1 |
Spirochaetes | Spirochaetes | Spirochaetaceae | 12 | RL14 | Treponema brennaborense DSM 12168 | 89 | NR_074742.1 |
RL53 | Treponema primitia ZAS-2 | 93 | NR_074169.1 | ||||
Proteobacteria | Alphaproteobacteria | Brucellaceae | 1 | RL32 | Ochrobactrum sp. A3 | 99 | HQ288931.1 |
Betaproteobacteria | Burkholderiaceae | 5 | RL11b | Burkholderia oxyphila strain OX-01 | 97 | NR_112887.1NR_102849.1 | |
Rhodocyclaceae | 5 | RL18 | Candidatus Accumulibacter phosphatis clade IIA UW-1 | 94 | NR_074763.1 | ||
RL25 | Propionivibrio limicola GolChi1 | 93 | NR_025455.1 | ||||
3 | RL34 | Azovibrio restrictus S5b2 | 90 | R_028678.1 | |||
Deltaproteobacteria | Desulfovibrionaceae | 2 | RL56, | Desulfovibrio desulfuricans | 93 | NR_036778.1 | |
Uncl. Desulfobacterales | 4 | RL12 | Desulfomonile tiedjei DSM 6799 | 84 | NR_074118.1 | ||
Firmicutes | Bacilli | Leuconostocaceae | 1 | RL13 | Leuconostoc citreum KM20 | 99 | NR_074694.1 |
Enterococcaceae | 2 | RL47 | Enterococcus canintestini LMG 13590 | 92 | NR_042386.1 | ||
Clostridia | Ruminococcaceae | 2 | RL2 | Hydrogenoanaerobacterium saccharovorans SW512 | 89 | NR_044425.1 | |
1 | RL35 | Acetanaerobacterium elongatum strain Z7 | 100 | NR_042930.1 | |||
3 | RL4 | Sporobacter termitidis SYR | 92 | NR_044972.1 | |||
2 | RL15 | Oscillibacter valericigenes Sjm18-20 | 89 | NR_074793.1 | |||
1 | RL17 | Clostridium cellulosi | 88 | NR_044624.1 | |||
1 | RL29 | Papillibacter cinnamivorans CIN1 | 87 | NR_025025.1 | |||
1 | RL31 | Ruminococcus champanellensis 18P13 | 84 | NR_102884.1 | |||
Uncl. Peptococcaceae | 7 | RL38 | Desulfosporosinus auripigmenti OREX-4 | 90 | NR_025551.1 | ||
Clostridiales Incertae Sedis XIII | 14 | RL39 | Anaerovorax odorimutans strain NorPut | 91 | NR_028911.1 | ||
Unclassified Clostridiales | 2 | RL26 | Clostridium lactatifermentans strain G17 | 86 | NR_025651.1 | ||
2 | RL21 | Caloramator australicus RC3 KCTC 5601 | 83 | NR_044489.1 | |||
Uncl. Clostridia | 1 | RL52 | Thermoanaerobacterium thermosaccharolyticum DSM 571 | 82 | NR_074419.1 | ||
“TG1” | 10 | RL1 | Uncultured Termite Group 1 bacterium phylotype Rs-D17 | 98 | NR_102488.1 | ||