Table 2 Classification of membrane transporters using TransAAP analysis
Transporter type | Oceanimonas sp. GK1 | Aeromonas hydrophila ssp. hydrophila ATCC 7966 | Aeromonas salmonicida ssp. salmonicida A449 | Aeromonas veronii B565 | Tolumonas auensis DSM 9187 |
|---|---|---|---|---|---|
ATP-dependent (%) | 44.6 | 44.6 | 49.7 | 44.6 | 53.3 |
Ion channels (%) | 3.9 | 4.7 | 5.3 | 4.5 | 3.3 |
Outer membrane porins (%) | 0.7 | 0.5 | 0.6 | 0.8 | 0.2 |
Phosphotransferase system (PTS) (%) | 1.6 | 5.6 | 5.5 | 6 | 11.4 |
Secondary transporter (%) | 47.6 | 41.9 | 36 | 41.3 | 29.9 |
Unclassified (%) | 1.6 | 2.2 | 2.4 | 2.3 | 1.6 |
Total transporters | 439 | 554 | 531 | 516 | 428 |
No. of transporters per Mb genome | 0.12 | 0.12 | 0.11 | 0.11 | 0.12 |