Table 3 The assignment of ABC transporters of all 7 genomes
ABC transporters | Oceanimonas sp. GK1 | A. salmonicida ssp.salmonicida 01-B526 | T. auensis DSM 9187 | A. salmonicida ssp. salmonicida A449 | A. hydrophila ssp. hydrophila ATCC 7966 | A. caviae Ae398 | A. veronii B565 | |
|---|---|---|---|---|---|---|---|---|
Mineral and organic ions | Sulfate | + | + | + | + | + | + | − |
Tungstate | − | − | − | + | + | − | + | |
Nitrate/nitrite/cyanate | − | − | + | − | + | + | − | |
Taurine | − | − | − | − | + | − | − | |
Molybdate | + | + | + | + | + | + | + | |
Iron (III) | + | + | + | + | + | + | + | |
Thiamin | – | + | + | + | + | + | + | |
Spermidine/putrescine | + | + | – | − | − | + | + | |
Putrescine | + | + | + | + | + | + | + | |
Glycine betaine/proline | − | + | − | + | + | + | − | |
Osmoprotectant | + | − | − | − | − | − | − | |
Oligosacharides and polyols | Maltose/maltodextrin | − | + | + | + | + | + | + |
Cyclodextrin | − | − | − | + | − | − | − | |
Monosacharides | Ribose | + | + | + | - | + | + | + |
L-Arabinose | − | + | + | + | + | + | − | |
Methyl-galactoside | − | + | + | + | + | + | + | |
D-Allose | − | − | + | − | − | − | − | |
Phosphate and amino acids | Phosphate | + | + | + | − | + | + | + |
Phosphonate | + | − | − | + | + | − | − | |
Lysine/arginine/ornithine | − | + | + | − | − | + | − | |
Arginine | + | + | − | + | + | + | + | |
General L-amino acid | + | − | + | − | − | − | − | |
Arginine/ornithine | + | + | + | + | + | + | + | |
Branched-chain amino acid | + | + | + | + | + | + | + | |
D-Methionine | + | + | + | + | + | + | + | |
Peptide | Oligopeptide | + | + | − | + | + | + | + |
Metalic cations, iron siderophore and vitamin B12 | Iron complex | + | + | + | + | + | + | + |
Vitamin B12 | + | + | + | + | + | + | − | |
Zinc | + | + | − | + | + | + | + | |
Iron (II)/manganese | + | − | − | − | − | − | − | |
Cobalt | − | − | + | − | − | − | − | |
BC-2 and other transporters | Antibiotics | + | + | + | + | + | + | + |
Capsular polysaccharide | + | − | − | − | − | − | + | |
Lipopolysaccharide | − | + | − | + | + | + | − | |
Lipoprotein | + | + | + | + | + | + | − | |
Heme | + | + | − | + | + | + | + | |
Cell division | + | + | + | + | + | + | + | |
Macrolide exporters | Macrolide exporters | + | + | + | + | + | + | + |
Other | YojI (putative ABC transporter) | − | − | + | + | + | − | + |
Putative ABC transporter | YddA (putative ABC transporter) | − | − | + | − | − | − | − |