Table 1 Numbers, abundance, and diversities of OTUs in the cecal microbiota of Tibetan pigs and PIC pigs. The identity value used for all the analyses in this study were 97%
From: The significance of the diversity and composition of the cecal microbiota of the Tibetan swine
Sample name | Optimize reads | OTUs | Chao1 | ace | Shannon index | Simpson index |
|---|---|---|---|---|---|---|
T1 | 10,425 | 418 | 515.68 | 485.34 | 4.66 | 0.02 |
T2 | 19,043 | 543 | 600.75 | 590.53 | 4.89 | 0.02 |
T3 | 12,026 | 440 | 542.10 | 503.08 | 4.44 | 0.03 |
T4 | 9342 | 462 | 528.94 | 535.11 | 4.68 | 0.02 |
T5 | 24,233 | 549 | 614.07 | 595.5 | 4.85 | 0.02 |
P1 | 22,923 | 423 | 498.00 | 473.35 | 4.19 | 0.04 |
P2 | 11,727 | 525 | 586.12 | 585.46 | 5.11 | 0.01 |
P3 | 11,048 | 412 | 473.39 | 464.8 | 4.80 | 0.02 |
P4 | 11,048 | 395 | 480.00 | 460.81 | 4.59 | 0.02 |
P5 | 18,013 | 583 | 686.06 | 659.85 | 5.16 | 0.01 |