Table 2 Core bacteria in the cecum of five Tibetan swines
From: The significance of the diversity and composition of the cecal microbiota of the Tibetan swine
Phylum | Shared OTUs | Reads of shares OTU | Reads of shared OTU/total reads (%) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
T1 | T2 | T3 | T4 | T5 | T1 | T2 | T3 | T4 | T5 | ||
Tenericutes | 10 | 67 | 234 | 65 | 39 | 160 | 0.64 | 1.23 | 0.54 | 0.42 | 0.66 |
Spirochaetae | 14 | 733 | 1436 | 749 | 737 | 1746 | 7.03 | 7.54 | 6.23 | 7.89 | 7.21 |
Proteobacteria | 2 | 18 | 63 | 9 | 5 | 60 | 0.17 | 0.33 | 0.07 | 0.05 | 0.25 |
Planctomycetes | 1 | 131 | 5 | 7 | 30 | 70 | 1.26 | 0.03 | 0.06 | 0.32 | 0.29 |
Firmicutes | 138 | 2697 | 4047 | 3002 | 2244 | 6070 | 25.87 | 21.25 | 24.96 | 24.02 | 25.05 |
Cyanobacteria | 1 | 1 | 3 | 7 | 2 | 13 | 0.01 | 0.02 | 0.06 | 0.02 | 0.05 |
Bacteroidetes | 90 | 5342 | 10,612 | 6985 | 5339 | 13,276 | 51.24 | 55.73 | 58.08 | 57.15 | 54.78 |
Total shared sequences | 256 | 8989 | 16,400 | 10,824 | 8396 | 21,395 | 86.23 | 86.12 | 90.00 | 89.87 | 88.29 |