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Table 1 The oligonucleotide primers used in the qRT-PCR assay in this study

From: Identification of salt tolerance-related genes of Lactobacillus plantarum D31 and T9 strains by genomic analysis

Locus/gene

Description of encoded protein

Sequence (5′– > 3′)

Predicted product length (bp)

Source

L. plantarum D31

    

D7Y65_00120

Potassium transporter Kup

F: ATCGTTGGCTCTTTAATCCC

166

This study

  

R: AACAAGCACGAAGGCGGTAT

  

D7Y65_03505

Cell membrane protein

F: TGTGACTGGGTTTGCTGAAT

124

This study

  

R: CTCCAACACCGCATCTTCTA

  

D7Y65_06915

Co-chaperone GroES

F: ATGACGGTCGTGTTTTAGAT

117

This study

  

R: CCTTGATACTTGACTTCGGT

  

D7Y65_06920

Chaperonin GroEL

F: GCTTCTGTTTCAGCCCTTCT

106

This study

  

R: TACATCATACCGCCCATACC

  

D7Y65_06955

Sigma-54 modulation protein

F: CAAGCAATTCGGGACTACGT

113

This study

  

R: TTTAGCCGTCTTGTCTGGGT

  

D7Y65_09830

Molecular chaperone DnaJ

F: TGGCGTATTAGTCTGTACCTG

164

This study

  

R: TGAAGTTTGAAGATGCGATC

  

D7Y65_09835

Molecular chaperone DnaK

F: ACCAAGTGAAAGTGGCGTAA

139

This study

  

R: AAAGTGGACTGGCAAAGAAT

  

D7Y65_13150

Potassium transporter Kup

F: GGACACGAAAGCCCAGGTAT

145

This study

  

R: TTAGACAAGTGGCCGAAACG

  

D7Y65_13295

LysR family

F: TGAAGGCCGTATTATGGATG

149

This study

  

R: GATTGCCGAAGAATTTGACC

  

D7Y65_02550*

Metal-independent α-mannosidase

F: AGATACGGGAATGATTTGGT

182

This study

  

R: TACGCACAGTCGTCTGGAGT

  

D7Y65_07055*

Glycosyl hydrolase family 8

F: CGGTGAGTGTTGGTGGTGAA

137

This study

  

R: CGGCGAACTGTCTTGCTGTA

  

D7Y65_13825*

Carboxypeptidase

F: ATAATAGTGCGGATTGTGCT

181

This study

  

R: TACTACCGTGACGATGGGAC

  

D7Y65_15155*

Potassium transporter Kup

F: AGCAGATGGCACCCTAACAC

169

This study

  

R: AACGACGGCAGTACCAAACC

  

D7Y65_15160*

Kdp E

F: CTGCACTTTGTCAGCGTCCTC

104

This study

  

R: CCGATATGGATGGGATGGAC

  

D7Y65_15165*

KdpD

F: TTTGGTTACGCTGCTTTCTT

106

This study

  

R: TAACATTAGCCTTGCCCATC

  

D7Y65_15180*

Kdp A

F: AACCACCAGTTGTTTGAGGA

142

This study

  

R: GGTATCCAACGTACAGAGGC

  

L. plantarum T9

    

D7Y66_02210

Cell membrane protein

F: TACCGGCTGCTTATGATACTTC

173

This study

  

R: CTCCAACACCGCATCTTCTA

  

D7Y66_03635

Co-chaperone GroES

F: CAATGACGGTCGTGTTTTAG

108

This study

  

R: CCTTGATACTTGACTTCGGT

  

D7Y66_03640

Chaperonin GroEL

F: GCTTCTGTTTCAGCCCTTCT

113

This study

  

R: TACATCATACCGCCCATACC

  

D7Y66_03675

Sigma-54 modulation protein

F: CAAGCAATTCGGGACTACGT

115

This study

  

R: TAGCCGTCTTGTCTGGGTGA

  

D7Y66_07525

Potassium transporter Kup

F: CTCAGCTATTTCGGTCAGGC

103

This study

  

R: CCATCGTCAGGTTAGCAGGT

  

D7Y66_08075

Molecular chaperone DnaJ

F: CCAGCAGGAACCGTCACTTT

140

This study

  

R: CCACTCGGTCGAATGATGAG

  

D7Y66_08080

Molecular chaperone DnaK

F: ACCAAGTGAAAGTGGCGTAA

139

This study

  

R: AAAGTGGACTGGCAAAGAAT

  

D7Y66_11330

LysR family

F: GGTTTCGAGACCGGCTAATA

179

This study

  

R: GCAACTTGCTGAACACGCTA

  

D7Y66_13435

Potassium transporter Kup

F: GGCAGTACCAAACCCTTGAA

168

This study

  

R: TTGTTAGCAGATGGCACCCT

  

lp_3505

Acetyl esterase

F: TTCGTGTTGGTAACTCGTGGGT

117

This study

  

R: TGTTGCATGGCTTAGGTGGG

  

 16S RNA

 

F: AAGGGTTTCGGCTCGTAAAA

247

Sun et al. 2014

  

R: TGCACTCAAGTTTCCCAGTT

  
  1. F forward primer, R reverse primer; *The genes detected in L. plantarum D31 strain