Table 2 Antisense RNAs transcribed within the ORF or UTR of genes with more than 1-fold expression change after nitrogen step-down
Gene | Gene function | sRNA ID | RNA location | RPKM log2 ratio |
|---|---|---|---|---|
all0136 | 30S ribosomal protein S1 | sRNA0120 | all0136 | 1.92 |
all0270 | Diacylglycerol kinase | sRNA0158 | all0270 ORF | 3.56 |
all0271 | Hypothetical protein | sRNA0161 | all0271 3' UTR | 1.28 |
all1290 | PvuII DNA methyltransferase | sRNA0332 | all1290 3' UTR | 1.36 |
all2096 | Oxidase | sRNA0499 | all2096 5' UTR | 1.19 |
all2457 | Hypothetical protein | sRNA0573 | all2457 | 1.08 |
all3226 | Hypothetical protein | sRNA0711 | all3226 3' UTR | 2.45 |
all5062 | Glyceraldehyde-3-phosphate dehydrogenase | sRNA1145 | all5062 | − 1.31 |
all5098 | Hypothetical protein | sRNA1153 | all5098 | − 10.42 |
all7592 | Cation transporting ATPase | sRNA0055 | all7592-asl7593 intergenic region | 11.38 |
alr0821 | Hypothetical protein | sRNA0259 | alr0821 ORF | 3.43 |
alr0877 | Probable acylphosphatase | sRNA0272 | alr0877 | 1.64 |
alr1044 | Transcriptional regulator | sRNA0295 | alr1044 ORF and 5' UTR | − 12.39 |
alr1139 | Hypothetical protein | sRNA0305 | alr1139 ORF | − 11.35 |
alr1231 | Two-component hybrid sensor and regulator | sRNA0320 | alr1231-alr1232 intergenic region | 3.94 |
alr1669 | Similar to chitooligosaccharide deacetylase NodB | sRNA0411 | alr1669 | 2.39 |
alr2125 | Unknown protein | sRNA0503 | alr2125 | 1.01 |
alr2887 | Outer-membrane protein TolC | sRNA0636 | alr2887-alr2888 intergenic region | 1.54 |
alr2895 | Imidazoleglycerol-phosphate synthase, cyclase subunit HisF | sRNA0639 | alr2895-asr2896 intergenic region | − 2.78 |
alr3018 | Probable DNA polymerase, bacteriophage-type | sRNA0668 | alr3018 | − 2.51 |
alr3415 | Hypothetical protein | sRNA0755 | alr3415 5' UTR | − 1.24 |
alr3479 | Similar to nitrogen regulation protein NtrR | sRNA0768 | alr3479 ORF | − 11.32 |
alr4156 | NADH dehydrogenase subunit 5 | sRNA0956 | alr4156 5' UTR | 1.84 |
alr4577 | Lipoprotein signal peptidase | sRNA1042 | alr4577-all4578 intergenic region | − 10.55 |
alr4718 | ATP-dependent RNA helicase | sRNA1072 | alr4718 5' UTR | − 1.25 |
asl0822 | Hypothetical protein | sRNA0260 | asl0822 3' UTR | 11.11 |
asr0098 | Unknown protein | sRNA0103 | asr0098 5' UTR | − 2.12 |
asr2016 | Unknown protein | sRNA0468 | asr2016 | 2.26 |
asr4319 | Photosystem I protein E | sRNA0987 | asr4319 | − 3.2 |