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Table 2 The substrate binding pocket, substrate Mg2+ binding site, active lid-residues, catalytic residues, and aspartate-rich regions of the phytoene synthases from Meiothermus taiwanensis strain RP, M. ruber, M. silvanus, Thermus thermophilus, Deinococcus radiodurans, Gelidibacter algens, Brassica napus, Staphylococcus aureus, and Cyanobacterium aponinum. The residues which are different from strain RP are written in boldface

From: Comparative analysis of structural and functional aspects of phytoene synthase from Meiothermus taiwanensis strain RP

Organisms

Substrate binding pocket residues

Substrate Mg2+ binding site residues

Active site lid-residues

Catalytic residues

Aspartate rich regions

Meiothermus taiwanensis strain RP

Ala(17), Phe (19), Tyr (38), Arg(42), Asp(45), Asp (49), Tyr(120), Ala (125), Gly (129), Gly (150), Met (153), Arg (160), Asp (161), Glu (164), Asp (165), Arg (170), Gly (227), Ala (228)

Asp (45), Asp (46), Ala (47), Val (48), Asp (49), Asp (161), Val (162), Gly (163), Glu (164), Asp (165)

His (15), Ser (16), Ala (17), Thr (18) , Phe (19), Arg (254), Ala (255), Ser (256), Leu (257)

Phe (19), Tyr (38), Asp (45), Asp (49), Tyr (120), Val (128), Ile (132), Met (153), Arg (160), Asp (161), Asp (165), Arg (170), Gly (227), Ala (228), Ala (232)

Asp (45), Asp (46), Ala (47), Val (48), Asp (49), Asp (161), Val (162), Gly (163), Glu (164), Asp (165)

Meiothermus ruber

Ala(19), Phe (21), Tyr (40), Arg(44), Asp(47), Asp (51), Tyr(122), Ala (127), Gly (131), Gly (152), Met (155), Arg (162), Asp (163), Glu (166), Asp (167), Arg (172), Gly (229), Ala (230)

Asp (47), Asp (48), Ala (49), Val (50), Asp (51), Asp (163), Val (164), Gly (165), Glu (166), Asp (167)

His (17), Ser (18), Ala (19), Thr (20) , Phe (21), Arg (256), Ala (257), Ser (258), Leu (259)

Phe (21), Tyr (40), Asp (47), Asp (51), Tyr (123), Val (131), Ile (134), Met (155), Arg (162), Asp (163), Asp (167), Arg (172), Gly (229), Ala (230), Ala (234)

Asp (47), Asp (48), Ala (49), Val (50), Asp (51), Asp (163), Val (164), Gly (165), Glu (166), Asp (167)

Meiothermus silvanus

Ala(17), Phe (19), Tyr (38), Arg(42), Asp(45), Asp (49), Tyr(120), Ala (125), Gly (129), Gly (153), Met (156), Arg (163), Asp (164), Glu (167), Asp (168), Arg (173), Ala(230), Ala (231)

Asp (45), Asp (46), Ala (47), Val (48), Asp (49), Asp (164), Val (165), Gly (166), Glu (167), Asp (168)

His (15), Ser (16), Ala (17), Thr (18) , Phe (19), Arg (257), Ala (258), Ser (259), Leu (260)

Phe (19), Tyr (38), Asp (45), Asp (49), Tyr (120), Val (128), Ile (132), Met (156), Arg (163), Asp (164), Asp (168), Arg (173), Ala (230), Ala (231), Ala (235)

Asp (45), Asp (46), Ala (47), Val (48), Asp (49), Asp (164), Val (165), Gly (166), Glu (167), Asp (168)

Thermus thermophilus

Ala(17), Phe (19), Tyr (38), Arg(42), Asp(45), Asp (49), Tyr(120), Ala (125), Gly (129), Gly (150), Leu (153), Arg (160), Asp (161), Glu (164), Asp (165), Arg (170), Ala(227), Ala (228)

Asp (45), Glu (46), Ala (47), Val (48), Asp (49), Asp (161), Val (162), Gly (163), Glu (164), Asp (165)

His (15), Ser (16), Ala (17), Thr (18) , Phe (19), Arg (254), Ala (255), His(256), Leu (257)

Phe (19), Tyr (38), Asp (45), Asp (49), Tyr (120), Val (128), Met (132), Leu (153), Arg (160), Asp (161), Asp (165), Arg (170), Ala (227), Ala (228), Ala (232)

Asp (45), Glu(46), Ala (47), Val (48), Asp (49), Asp (161), Val (162), Gly (163), Glu (164), Asp (165)

Deinococcus radiodurans

Lys (51), Phe (53), Tyr (72), Arg(76), Asp(79), Asp(83), Tyr(157), Ala (162), Gly (166), Gly (189), Met (192), Arg (199), Asp (200), Glu (203), Asp (204), Arg (209), Leu (271), Ala (272)

Asp (79), Asp (80), Ile (81), Val (82), Asp (83), Asp (200), Val (201), Gly (202), Glu (203), Asp (204)

His (49), Ser (50), Lys (51), Thr (52) , Phe (53), Arg (298), Ala (299), Tyr (300), Val (301)

Phe (53), Tyr (72), Asp (79), Asp (83), Tyr (157), Val (165), Val (169), Met (192), Arg (199), Asp (200), Asp (204), Arg (209), Lys (271), Ala (272), Ala (276)

Asp (79), Asp (80), Ile (81), Val (82), Asp (83), Asp (200), Val (201), Gly (202), Glu (203), Asp (204)

Gelidibacter algens

Thr (22), Phe (24), Tyr (43), Arg(47), Asp(50), Asp (54), Tyr(128), Ala (133), Gly (137), Gly (163), Phe (166), Arg (173), Asp (174), Ala (177), Asp (178), Arg (184), Phe (227), Gly (228)

Asp (50), Glu (51), Ile (52), Val (53), Asp (54), Asp (174), Leu (175), Lys (176), Ala (177), Asp (178)

Tyr (20), Ser (21), Thr (22), Ser (23) , Phe (24), Arg (255), Ile (256), Arg (257), Val (258)

Phe (24), Tyr (43), Asp (50), Asp (54), Tyr (128), Val (136), Cys (140), Phe (166), Arg (173), Asp (174), Asp (178), Arg (184), Phe(227), Gly (228), Ala (232)

Asp (50), Glu (51), Ile (52), Val (53), Asp (54), Asp (174), Leu (175), Lys (176), Ala (177), Asp (178)

Staphylococcus aureus

Lys(20), Phe (22), Tyr (41), Arg(45), Asp(48), Asp (52), Tyr(129), Ala (134), Gly (138), Gly (161), Lys(164), Arg (171), Asp (172), Glu (175), Asp (176), Arg (181), Pro (239), Ile (240)

Asp (48), Asp (49), Ser (50), Ile (51), Asp (52), Asp (172), Val (173), Gly (174), Glu (175, Asp (176)

His (18), Ser (19), Lys (20), Ser (21) , Phe (22), Arg (265), Val (266), Phe (267),Val(268)

Phe (22), Tyr (41), Asp (48), Asp (52), Tyr (129), Val (137), Leu (141), Leu (164), Arg (170), Asp (171), Asp (175), Arg (181), Pro (239), Ile(240), Ala (244)

Asp (48), Asp (49), Ser (50), Ile (51), Asp (52), Asp (172), Val (173), Gly (174), Glu (175, Asp (176)

Cyanobacterium aponinum

Lys(33), Phe (35), Tyr (54), Arg(58), Asp(61), Asp (65), Tyr(139), Ala (144), Gly (148), Gly (182), Asn (185), Arg (192), Asp (193), Glu (196), Asp (197), Arg (202), Trp (260), Pro (261)

Asp (61), Glu (62), Leu (63), Val (64), Asp (65), Asp (193), Val (194), Gly (195), Glu (196), Asp (197)

Tyr(31), Ser (32), Lys (33), Thr(34) , Phe (35), Arg (287), Ala(288), Phe (289),Val(290)

Phe (35), Tyr (54), Asp (61), Asp (65), Tyr (139), Val (147), Ser(151), Asn(185), Arg (192), Asp (193), Asp (197), Arg (202), Gly (227), Trp (260), Pro (261)

Asp (61), Glu (62), Leu (63), Val (64), Asp (65), Asp (193), Val (194), Gly (195), Glu (196), Asp (197)

Brassica napus

Lys(148), Phe (150), Tyr (169), Arg(173), Asp(176), Asp (180), Tyr(254), Ala (259), Gly (263), Gly (291), Asn (294), Arg (301), Asp (302), Glu (305), Asp (306, Arg (311), Trp(369), Pro (370)

Asp (176), Glu (177), Leu (178), Val (179), Asp (180), Asp (302), Val (303), Gly (304), Glu (305), Asp (306)

Tyr(146), Ala (147), Lys (148), Thr (149) , Phe (150), Arg (396), Ala (397), Tyr (398), Val (399)

Phe (150), Tyr (169), Asp (176), Asp (180), Tyr (254), Val (262), Ser (266), Asn (294), Arg (301), Asp (302), Asp (306), Arg (311), Trp (369), Pro (370), Ser (374)

Asp (176), Glu (177), Leu (178), Val (179), Asp (180), Asp (302), Val (303), Gly (304), Glu (305), Asp (306)