Table 2 Number of genes associated with general COG functional categories of the full genome sequences of B. megaterium strain BHS1
Code | Functional annotation | Strain BHS1 (number of genes) | % * |
|---|---|---|---|
J | Translation, ribosomal structure, and biogenesis | 200 | 3.6% |
K | Transcription | 443 | 8.0% |
L | Replication, recombination, and repair | 139 | 2.5% |
D | Cell cycle control, cell division, chromosome partitioning | 59 | 1.0% |
O | Posttranslational modification, protein turnover, chaperones | 57 | 1.0% |
M | Cell wall/membrane/envelope biogenesis | 1559 | 28.29%~ 28.3% |
N | Cell motility | 17 | 0.3% |
P | Inorganic ion transport and metabolism | 48 | 0.87 % |
T | Signal transduction mechanisms | 117 | 2.1% |
C | Energy production and conversion | 8 | 0.1% |
G | Carbohydrate transport and metabolism | 16 | 0.29%~0.3 % |
E | Amino acid transport and metabolism | 32 | 0.58 %~0.6 % |
F | Nucleotide transport and metabolism | 164 | 2.97 %~3% |
H | Coenzyme transport and metabolism | 16 | 0.29%~0.3% |
I | Lipid transport and metabolism | 46 | 0.8% |
Q | Secondary metabolites biosynthesis, transport, and catabolism | 47 | 0.85% |
S | Function unknown | 1902 | 34.5% |
- | No. IPS (not in COGs). | 469 | 8.5% |
A | RNA processing and modifications | 116 | 2.1% |
B | Chromatin structure and dynamics | 0 | 0% |
V | Defense mechanism | 1 | 0.018% |
U | Intracellular trafficking | 0 | 0% |
Total | Total number of genes | 5509 |